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Toward an Automated System for the Analysis of Cell Behavior: Cellular Event Detection and Cell Tracking in Time-lapse Live Cell Microscopy
SeungIl Huh
doctoral dissertation, tech. report CMU-RI-TR-13-06, Robotics Institute, Carnegie Mellon University, March, 2013
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Automated mitosis detection of stem cell populations in phase-contrast microscopy images
Seung-il Huh, D Ker, Ryoma Bise, Mei Chen, and Takeo Kanade
IEEE Trans. Med. Imaging, March, 2011, pp. 586 - 596.
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Spatially Directed Guidance of Stem Cell Population Migration by Immobilized Patterns of Growth Factor
Eric Miller, Kang Li, Takeo Kanade, L. Walker, Lee Weiss, and Philip Campbell
Biomaterials, Vol. 32, January, 2011, pp. 2775 - 2785.
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Cell Image Analysis: Algorithms, System and Applications
Takeo Kanade, Zhaozheng Yin, Ryoma Bise, SeungIl Huh, Sung Eun Eom, Michael Sandbothe, and Mei Chen
IEEE Workshop on Applications of Computer Vision (WACV) 2011, January, 2011.
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Data-driven Prediction of Stem Cell Expansion Cultures
Zhaozheng Yin, Dai Fei Elmer Ker, Silvina Nanci Junkers, Takeo Kanade, Mei Chen, Lee Weiss, and Phil Campbell
33rd Annual International Conference of the IEEE EMBS
, November, 2011.
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Restoring DIC Microscopy Images from Multiple Shear Directions
Zhaozheng Yin, Dai Fei Elmer Ker, and Takeo Kanade
IEEE International Symposium on Biomedical Imaging, 2011.
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Restoring Artifact-Free Microscopy Image Sequences
Zhaozheng Yin and Takeo Kanade
IEEE International Symposium on Biomedical Imaging, 2011.
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Reliable Cell Tracking By Global Data Association
Ryoma Bise, Zhaozheng Yin, and Takeo Kanade
IEEE International Symposium on Biomedical Imaging, 2011.
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pdf (2MB) | Copyrighted
Mitosis detection for stem cell tracking in phase-contrast microscopy images
Seung-il Huh, Sungeun Eom, Ryoma Bise, Zhaozheng Yin, and Takeo Kanade
IEEE International Symposium on Biomedical Imaging, 2011, pp. 2121-2127.
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Understanding the Optics to Aid Microscopy Image Segmentation
Zhaozheng Yin, Kang Li, Takeo Kanade, and Mei Chen
International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) 2010, September, 2010.
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Heterogeneous Conditional Random Field: Realizing Joint Detection and Segmentation of Cell Regions in Microscopic Images
Jiyan Pan, Takeo Kanade, and Mei Chen
IEEE Conference on Computer Vision and Pattern Recognition (CVPR) 2010, June, 2010.
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Mitosis Sequence Detection Using Hidden Conditional Random Fields
Anan Liu, Kang Li, and Takeo Kanade
IEEE International Symposium on Biomedical Imaging (ISBI) 2010, April, 2010.
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Detection of Hematopoietic Stem Cells in Microscopy Images Using a Bank of Ring Filters
Sung Eun Eom, Ryoma Bise, and Takeo Kanade
The IEEE International Symposium on Biomedical Imaging, April, 2010.
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pdf (595KB) | Copyrighted
Cell Segmentation in Microscopy Imagery Using a Bag of Local Bayesian Classifiers
Zhaozheng Yin, Ryoma Bise, Mei Chen, and Takeo Kanade
The IEEE International Symposium on Biomedical Imaging (ISBI) 2010, April, 2010.
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pdf (1MB) | Copyrighted
Reliably Tracking Partially Overlapping Neural Stem Cells in DIC Microscopy Image Sequences
Ryoma Bise, Kang Li, Sungeun Eom, and Takeo Kanade
MICCAI Workshop on Optical Tissue Image Analysis in Microscopy, Histopathology and Endoscopy (OPTMHisE), September, 2009, pp. 67-77.
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Learning to Detect Different Types of Cells under Phase Contrast Microscopy
Jiyan Pan, Takeo Kanade, and Mei Chen
Microscopic Image Analysis with Applications in Biology (MIAAB) 2009, September, 2009.
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Computer Vision Tracking of Stemness
Kang Li, Eric Miller, Mei Chen, Takeo Kanade, Lee Weiss, and Phil Campbell
Proc. IEEE International Symposium on Biomedical Imaging (ISBI): Special Session on In Vivo Microscopic Image Analysis, May, 2008, pp. 847 - 850.
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Cell Population Tracking and Lineage Construction with Spatiotemporal Context
Kang Li, Mei Chen, Takeo Kanade, Eric Miller, Lee Weiss, and Phil Campbell
Medical Image Analysis, Vol. 12, No. 5, October, 2008, pp. 546 - 566.
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Cell Population Tracking and Lineage Construction Using Multiple-Model
Dynamics Filters and Spatiotemporal Optimization
Kang Li and Takeo Kanade
Proceedings of the 2nd International Workshop on Microscopic Image
Analysis with Applications in Biology (MIAAB), September, 2007.
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pdf (790KB) | Copyrighted
Cell Population Tracking and Lineage Construction with Spatiotemporal
Context
Kang Li, Mei Chen, and Takeo Kanade
Proceedings of the 10th International Conference on Medical Image
Computing and Computer-Assisted Intervention (MICCAI), 2007, pp. 295 - 302.
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Online Tracking of Migrating and Proliferating Cells Imaged with Phase-Contrast Microscopy
Kang Li, Eric Miller, Lee Weiss, Phil Campbell, and Takeo Kanade
Proceedings of the 2006 Conference on Computer Vision and Pattern Recognition Workshop (CVPRW '06), June, 2006, pp. 65 - 72.
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pdf (601KB) | Copyrighted
Tracking of Migrating and Proliferating Cells in Phase-Contrast Microscopy Imagery for Tissue Engineering
Takeo Kanade and Kang Li
Proceedings of the First International Workshop on Computer Vision for Biomedical Image Applications (CVBIA), October, 2005, pp. 24.
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pdf (72KB) | Copyrighted
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