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Cell Tracking
Head: Mei Chen, Phil Campbell, Lee Weiss, and Takeo Kanade
Contact: SeungIl Huh
Mailing address:
Carnegie Mellon University
Robotics Institute
5000 Forbes Avenue
Pittsburgh, PA 15213

Non-RI center(s) / consortia:
Associated center(s) / consortia:
 Medical Robotics Technology Center (MRTC)
Associated lab(s) / group(s):
 Tissue Engineering
Project Homepage
This page last updated - February 2012.
Publications
  • Toward an Automated System for the Analysis of Cell Behavior: Cellular Event Detection and Cell Tracking in Time-lapse Live Cell Microscopy

    SeungIl Huh
    doctoral dissertation, tech. report CMU-RI-TR-13-06, Robotics Institute, Carnegie Mellon University, March, 2013
    Details | pdf (51MB) | Copyrighted

  • Automated mitosis detection of stem cell populations in phase-contrast microscopy images

    Seung-il Huh, D Ker, Ryoma Bise, Mei Chen, and Takeo Kanade
    IEEE Trans. Med. Imaging, March, 2011, pp. 586 - 596.
    Details

  • Spatially Directed Guidance of Stem Cell Population Migration by Immobilized Patterns of Growth Factor

    Eric Miller, Kang Li, Takeo Kanade, L. Walker, Lee Weiss, and Philip Campbell
    Biomaterials, Vol. 32, January, 2011, pp. 2775 - 2785.
    Details | pdf (2MB) | Copyrighted

  • Cell Image Analysis: Algorithms, System and Applications

    Takeo Kanade, Zhaozheng Yin, Ryoma Bise, SeungIl Huh, Sung Eun Eom, Michael Sandbothe, and Mei Chen
    IEEE Workshop on Applications of Computer Vision (WACV) 2011, January, 2011.
    Details

  • Data-driven Prediction of Stem Cell Expansion Cultures

    Zhaozheng Yin, Dai Fei Elmer Ker, Silvina Nanci Junkers, Takeo Kanade, Mei Chen, Lee Weiss, and Phil Campbell
    33rd Annual International Conference of the IEEE EMBS , December, 2011.
    Details | pdf (1MB) | Copyrighted

  • Restoring DIC Microscopy Images from Multiple Shear Directions

    Zhaozheng Yin, Dai Fei Elmer Ker, and Takeo Kanade
    IEEE International Symposium on Biomedical Imaging, 2011.
    Details

  • Restoring Artifact-Free Microscopy Image Sequences

    Zhaozheng Yin and Takeo Kanade
    IEEE International Symposium on Biomedical Imaging, 2011.
    Details

  • Reliable Cell Tracking By Global Data Association

    Ryoma Bise, Zhaozheng Yin, and Takeo Kanade
    IEEE International Symposium on Biomedical Imaging, 2011.
    Details | pdf (2MB) | Copyrighted

  • Mitosis detection for stem cell tracking in phase-contrast microscopy images

    Seung-il Huh, Sungeun Eom, Ryoma Bise, Zhaozheng Yin, and Takeo Kanade
    IEEE International Symposium on Biomedical Imaging, 2011, pp. 2121-2127.
    Details

  • Understanding the Optics to Aid Microscopy Image Segmentation

    Zhaozheng Yin, Kang Li, Takeo Kanade, and Mei Chen
    International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) 2010, October, 2010.
    Details | pdf (2MB) | Copyrighted

  • Heterogeneous Conditional Random Field: Realizing Joint Detection and Segmentation of Cell Regions in Microscopic Images

    Jiyan Pan, Takeo Kanade, and Mei Chen
    IEEE Conference on Computer Vision and Pattern Recognition (CVPR) 2010, July, 2010.
    Details

  • Mitosis Sequence Detection Using Hidden Conditional Random Fields

    Anan Liu, Kang Li, and Takeo Kanade
    IEEE International Symposium on Biomedical Imaging (ISBI) 2010, May, 2010.
    Details

  • Detection of Hematopoietic Stem Cells in Microscopy Images Using a Bank of Ring Filters

    Sung Eun Eom, Ryoma Bise, and Takeo Kanade
    The IEEE International Symposium on Biomedical Imaging, May, 2010.
    Details | pdf (595KB) | Copyrighted

  • Cell Segmentation in Microscopy Imagery Using a Bag of Local Bayesian Classifiers

    Zhaozheng Yin, Ryoma Bise, Mei Chen, and Takeo Kanade
    The IEEE International Symposium on Biomedical Imaging (ISBI) 2010, May, 2010.
    Details | pdf (1MB) | Copyrighted

  • Reliably Tracking Partially Overlapping Neural Stem Cells in DIC Microscopy Image Sequences

    Ryoma Bise, Kang Li, Sungeun Eom, and Takeo Kanade
    MICCAI Workshop on Optical Tissue Image Analysis in Microscopy, Histopathology and Endoscopy (OPTMHisE), October, 2009, pp. 67-77.
    Details

  • Learning to Detect Different Types of Cells under Phase Contrast Microscopy

    Jiyan Pan, Takeo Kanade, and Mei Chen
    Microscopic Image Analysis with Applications in Biology (MIAAB) 2009, October, 2009.
    Details

  • Computer Vision Tracking of Stemness

    Kang Li, Eric Miller, Mei Chen, Takeo Kanade, Lee Weiss, and Phil Campbell
    Proc. IEEE International Symposium on Biomedical Imaging (ISBI): Special Session on In Vivo Microscopic Image Analysis, May, 2008, pp. 847 - 850.
    Details

  • Cell Population Tracking and Lineage Construction with Spatiotemporal Context

    Kang Li, Mei Chen, Takeo Kanade, Eric Miller, Lee Weiss, and Phil Campbell
    Medical Image Analysis, Vol. 12, No. 5, October, 2008, pp. 546 - 566.
    Details

  • Cell Population Tracking and Lineage Construction Using Multiple-Model Dynamics Filters and Spatiotemporal Optimization

    Kang Li and Takeo Kanade
    Proceedings of the 2nd International Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB), October, 2007.
    Details | pdf (790KB) | Copyrighted

  • Cell Population Tracking and Lineage Construction with Spatiotemporal Context

    Kang Li, Mei Chen, and Takeo Kanade
    Proceedings of the 10th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2007, pp. 295 - 302.
    Details | pdf (2MB) | Copyrighted

  • Online Tracking of Migrating and Proliferating Cells Imaged with Phase-Contrast Microscopy

    Kang Li, Eric Miller, Lee Weiss, Phil Campbell, and Takeo Kanade
    Proceedings of the 2006 Conference on Computer Vision and Pattern Recognition Workshop (CVPRW '06), July, 2006, pp. 65 - 72.
    Details | pdf (601KB) | Copyrighted

  • Tracking of Migrating and Proliferating Cells in Phase-Contrast Microscopy Imagery for Tissue Engineering

    Takeo Kanade and Kang Li
    Proceedings of the First International Workshop on Computer Vision for Biomedical Image Applications (CVBIA), October, 2005, pp. 24.
    Details | pdf (72KB) | Copyrighted